HMC Publications
Publications

The following publications have been authored by members of the Helmholtz Metadata Collaboration (HMC) or have been created with their support.

2023

  • Ballani, Felix; Schaller, Theresa; Steinmeier, Leon; Koubaa, Mohammed Anis; Schweikert, Jan; Stucky, Karl-Uwe; Süß, Wolfgang, Report on research data management interviews conducted for HMC Hub Energy in 2022 (2023), https://publikationen.bibliothek.kit.edu/1000164395.

  • Blumenröhr, Nicolas; Aversa, Rossella, From implementation to application: FAIR digital objects for training data composition, Technical paper (2023), https://doi.org/10.3897/rio.9.e108706.

  • Buttigieg, Pier; Mannix, Oonagh; Preuß, Gabriel; Fathalla, Said; D'Mello, Fiona; Sandfeld, Stefan, The Helmholtz Knowledge Graph & the unified Helmholtz information and data exchange (unHIDE), Conference Paper (2023), https://zenodo.org/records/10043115.

  • Ihsan, Ahmad Zainul; Fathalla, Said; Sandfeld, Stefan, DISO: A Domain Ontology for Modeling Dislocations in Crystalline Materials, Conference paper (2023), https://doi.org/10.1145/3555776.3578739.

2022

  • Heidrich, Benedikt; Schmieder, Kai; Süß, Wolfgang; Hagenmeyer, Veit et al., Controlling Non-Stationarity and Periodicities in Time Series Generation Using Conditional Invertible Neural Networks, Journal APIN, url:https://link.springer.com/article/10.1007/s10489-022-03742-7.

  • Jejkal, Thomas; Chelbi, Sabrine; Pfeil, Andreas; Wittenburg, Peter, Evaluation of Application Possibilities for Packaging Technologies in Canonical Workflows, Data Intelligence (2022), 4 (2), doi:10.1162/dint_a_00137.

  • Pfeil, Andreas; Jejkal, Thomas; Tonne, Danah;  Götzelmann, Germaine, From a Dynamic Image Annotation Process within the Humanities to a Canonical Workflow, Data Intelligence (2022), 4 (2), doi:10.1162/dint_a_00138.

2021

  • Andersen, Casper W.; Aversa, Rosella; et al., “OPTIMADE, an API for exchanging materials data”, 2021, Scientific Data, 8(1), 217, doi:10.1038/s41597-021-00974-z.

  • Iglezakis, Dorothea; Stotzka, Rainer; et al., „Interoperabilität von Metadaten innerhalb der NFDI“, 2021, Bausteine Forschungsdatenmanagement, doi:10.17192/BFDM.2021.2.8313.

  • Dimitrova, Mariya; Buttigieg, Pier Luigi; et al., “A streamlined workflow for conversion, peer review, and publication of genomics metadata as omics data papers”, 2021, GigaScience, Volume 10, Issue 5, giab034, doi:10.1093/gigascience/giab034.

  • Jackson, Rebecca; Buttigieg, Pier Luigi; et al., “OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies”, 2021, Database, Volume 2021, 2021, baab069, doi:10.1093/database/baab069.

  • Wierling, August; Hoyer-Klick, Carsten; Süß, Wolfgang et al., “FAIR Metadata Standards for Low Carbon Energy Research—A Review of Practices and How to Advance”, 2021, Energies, 14(20), 6692, doi:10.3390/en14206692.

2022

  • Schweikert, Jan; Stucky, Karl-Uwe; Koubaa, Mohamed Anis; Süß, Wolfgang; Hagenmeyer, Veit, Implementation of a Photovoltaic System Model Using FAIR Digital Objects, Abstract, Proceedings FDO Conference, doi:10.3897/rio.8.e93929.

2021

  • Buttigieg, Pier Luigi; et al., "Evolving the UNESCO/IOC Ocean Best Practices System: preparing methods for the oceans’ digital ecosystem"", 2021, url:https://imdis.seadatanet.org/files/IMDIS2021_147_abstract.pdf.

  • Meyer, Raïssa; Buttigieg, Pier Luigi; et al., “Aligning Standards Communities: Sustainable Darwin Core MIxS Interoperability”, 2021, Biodiversity Information Science and Standards, 5, e73775, doi:10.3897/biss.5.73775.

2023

  • Blumenröhr, Nicolas; McKinnon, Neil; Aversa, Rossella, FAIR Data Management Workflow for MRI Data, Conference Proceedings (2023), https://doi.org/10.4126/FRL01-006444992.

  • Günther, Gerrit; Mannix, Oonagh; Ruslan, Ovsyannikov; Vadilonga, Simone, FAIR Data of Physical and Digital Beamlines, Conference proceedings (2023), https://doi.org/10.18429/JACoW-ICALEPCS2023-THMBCMO17.

  • Günther, Gerrit; Baunack, Sebastian; Capozza, Luigi; Freyermuth, Oliver; Camina, Pau Gonzalez; Gou, Boxing; Isaak, Johann; Karstensen, Sven; Lindner, Axel; Maas, Frank; Mannix, Oonagh; Mistry, Andrew; Oceano, Isabella; Schneide, Christiane; Schörner-Sadenius, Thomas; Schwarz, Kilian; Serve, Vivien; Stein, Lisa-Marie; Typel, Stefan; Wilfert, Malte C., IR of FAIR - Principles at the Instrument Level, Conference proceedings (2023), doi:10.18429/JACoW-ICALEPCS2023-WE3BCO09;

  • Kades, Klaus; Scherer, Jonas; Scholtyssek, Jan; Penzkofer, Tobiasl; Nolden, Marco; Maier-Hein, Klaus, Efficient DICOM-Image Tagging and Cohort Curation within Kaapana, Conference proceedings (2023), https://doi.org/10.1007/978-3-658-36932-3_59.

  • Karstensen, Sven; Caminal, Pau Gonzalez; Günther, Gerrit; Lindner, Axel; Mannix, Oonagh, Creating of HDF5 Files as Data Source for Analyses Using the Example of ALPS IIc and the DOOCS Control System, Conference proceedings (2023), doi:10.18429/JACoW-ICALEPCS2023-THPDP101.

  • Koubaa, Mohamad Anis; Süß, Wolfgang; Stucky, Karl-Uwe; Schmidt, Andreas, Semantico - Toolchain for literature classification, Conference proceedings (2023) doi:10.5281/zenodo.8420493.

  • Kulla, Lucas; Bröder, Jens; Curdt, Constanze; Kubin, Markus; Kollai, Helen; Lemster, Christine; Nolden, Marco; Schmieder, Kai; Strupp, Annika; Stucky, Karl-Uwe, The HMC Information Portal for Enhanced Metadata Collaboration in the Helmholtz FAIR Data Space, Conference proceedings (2023), https://doi.org/10.52825/cordi.v1i.383.

  • Ost, Philipp; Shakeel, Yusra; Tögel, Philipp, Data Collections Explorer - An Easy-to-Use Tool for Sharing and Discovering Research Data, Conference proceedings (2023), https://doi.org/10.52825/cordi.v1i.405.

  • Pirogov, Anton; Soylu, Mustafa; D'Mello, Fiona; Hofmann, Volker; Sandfeld, Stefan, Metador: A metadata-centric framework for enabling FAIR research (meta) data handling, Conference proceedings (2023), https://doi.org/10.5281/zenodo.8431502.

  • Preuß, Gabriel; Schmidt, Alexander; Sedeqi, Mojeeb; Serve, Vivien; Mannix, Oonagh; Kubin, Markus, Monitoring the State of Open and FAIR Data in Helmholtz, Conference proceedings (2023), https://doi.org/10.52825/cordi.v1i.389.

  • Schmidt, Andreas; Koubaa, Mohamad Anis; Schweikert, Jan; Stucky, Karl-Uwe; Süß, Wolfgang; Hagenmeyer, Veit, A Generic Tool Supporting the Dissemination of Time Series Data Following FAIR Principles, Conference proceedings (2023), doi:10.5220/0012254300003598.

  • Schmidt, Andreas; Koubaa, Mohamad Anis, Practical Data Science Using the Shell, Conference proceedings (2023), https://publikationen.bibliothek.kit.edu/1000165322.

  • Schmidt, Andreas; Koubaa, Mohamad Anis; Schweikert, Jan; Stucky, Karl-Uwe; Süß, Wolfgang, Zeitgeist: An Interactive FAIR Data Publishing System for Time Series Data, Conference proceedings (2023), doi:10.5281/zenodo.8382658.

  • Soylu, Mustafa; Pirogov, Anton; Hofmann, Volker; Sandfeld, Stefan, Automating Metadata Handling in Research Software Engineering, Conference proceedings (2023), https://doi.org/10.5281/zenodo.8431462.

  • Vadilonga, Simone; Günther, Gerrit et al., Advancements in Beamline Digital Twin at BESSYII, Conference proceedings (2023), https://doi.org/10.18429/JACoW-ICALEPCS2023-THMBCMO18.

2022

  • Ruiz, Arellano; Hoyer-Klick, Carsten, Competency questions for a test first development of an energy systems analysis ontology (ceur-ws.org), Proceeding of The Eighth Joint Ontology Workshops (JOWO’22).

  • Schweikert, Jan; Stucky, Karl-Uwe; Süß, Wolfgang; Hagenmeyer, Veit, A Photovoltaic System Model Integrating FAIR Digital Objects and Ontologies, Proceedings IEEE Sege, doi:10.1109/SEGE55279.2022.9889768.

  • Kades, Klaus; Scholtyssek, Jan; Nolden, Marco; Maier-Hein, Klaus Efficient DICOM Image Tagging and Cohort Curation Within Kaapana, Conference Proceedings, Bildverarbeitung Für Die Medizin, doi:10.1007/978-3-658-36932-3_59.

2021

  • Günther, Gerrit; Smith William; Kubin, Markus; Mannix, Oonagh; et al., “FAIR meets EMIL: Principles in Practice”, 2021, ICALEPCS 2021, Joint accelerator conferences website (JACoW), doi:10.18429/JACoW-ICALEPCS2021-WEBL05.

  • Ihsan, Ahmad Z.; et al., “Steps towards a Dislocation Ontology for Crystalline Materials” In by García-Castro, Raúl; Davies, John; Antoniou, Grigoris and Fortuna, Carolina (eds.) “CEUR Workshop Proceedings”, Vol. 2887, url: http://ceur-ws.org/Vol-2887/paper4.pdf.        

  • Joseph, Reetu; Ihsan, Ahmad Z.; Sandfeld, Stefan; Stotzka, Rainer; et al., “Metadata schema to support FAIR data in scanning electron microscopy”, 2021, CEUR Workshop Proceedings, 3036, doi:10.5445/IR/1000141604.

2023

2022

  • Ihsan, Ahmad Zainul; Fathalla, Said; Sandfeld, Stefan, Dislocation Ontology (DISO), url:https://purls.helmholtz-metadaten.de/disos/diso.

  • Arndt, Susanne; Hofmann, Volker; Söding, Emanuel et al. Cookbooks, Guidance, and Best Practices, Working Group Charter (NFDI section-metadata), doi:10.5281/zenodo.6758256.

  • Götzelmann, Germaine, Computergestützte Analyse von Illustrationswiederverwendungen in deutschsprachigen Drucken des 16. Jahrhunderts, Dissertation, 05.05.2022.

  • Duda, Leonhard Johannes, Design und Implementierung eines XML-basierten Metadaten-Editors, Bachelor Thesis, 31.05.2022.

  • Gilein, Astrid, Virtueller Werkzeugkasten für Data Mining und FAIR-Data-Metriken von Datenpublikationen, Bachelor Thesis.

  • Tzotchev, Nicola, A Software Library for Research Data Packaging and Exchange, Bachelor Thesis, 17.05.2022.

2021

  • Stotzka, Rainer et al., “RDA Interest Group Charter: FAIR Digital Object Fabric”, 12/2021, doi:10.5281/ZENODO.6321983.

  • Eberl, Christop; Sandfeld, Stefan; Stotzka, Rainer et al., “Consortium Proposal NFDI-MatWerk”, 2021, doi:10.5281/ZENODO.5082837.

  • Koepler, Oliver; Stotzka, Rainer et al., „Sektionskonzept Meta(daten), Terminologien und Provenienz zur Einrichtung einer Sektion im Verein Nationale Forschungsdateninfrastruktur (NFDI) e.V.“, 2021, doi:10.5281/ZENODO.5619089.

  • Samuel, Robyn M.; Meyer, Raissa; Buttigieg, Pier Luigi; et al., “Toward a Global Public Repository of Community Protocols to Encourage Best Practices in Biomolecular Ocean Observing and Research”, 2021, Frontiers in Marine Science, 8, doi:10.3389/fmars.2021.758694.